Navigation
index
modules
|
BIRL 0.2.5 documentation
»
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
_
_absolute_path() (birl.benchmark.ImRegBenchmark method)
_check_required_params() (birl.utilities.experiments.Experiment method)
_clean_images() (in module bm_experiments.bm_comp_perform)
_clear_after_registration() (birl.benchmark.ImRegBenchmark class method)
(birl.bm_template.BmTemplate method)
(bm_experiments.bm_ANTs.BmANTs method)
(bm_experiments.bm_DROP.BmDROP method)
(bm_experiments.bm_DROP2.BmDROP2 method)
(bm_experiments.bm_elastix.BmElastix method)
(bm_experiments.bm_RVSS.BmRVSS method)
_copy_config_to_expt() (birl.benchmark.ImRegBenchmark method)
_df_drop_unnamed() (in module birl.benchmark)
_evaluate() (birl.benchmark.ImRegBenchmark method)
(birl.utilities.experiments.Experiment class method)
_execute_img_registration() (birl.benchmark.ImRegBenchmark method)
_Experiment__check_exist_path() (birl.utilities.experiments.Experiment method)
_Experiment__create_folder() (birl.utilities.experiments.Experiment method)
_extract_execution_time() (birl.benchmark.ImRegBenchmark method)
(birl.bm_template.BmTemplate method)
(bm_experiments.bm_ANTsPy.BmANTsPy method)
(bm_experiments.bm_rNiftyReg.BmRNiftyReg method)
_extract_warped_image_landmarks() (birl.benchmark.ImRegBenchmark class method)
(birl.bm_template.BmTemplate method)
(bm_experiments.bm_ANTs.BmANTs method)
(bm_experiments.bm_ANTsPy.BmANTsPy method)
(bm_experiments.bm_bUnwarpJ.BmUnwarpJ method)
(bm_experiments.bm_DROP.BmDROP method)
(bm_experiments.bm_DROP2.BmDROP2 method)
(bm_experiments.bm_elastix.BmElastix method)
(bm_experiments.bm_rNiftyReg.BmRNiftyReg method)
(bm_experiments.bm_RVSS.BmRVSS method)
_gene_out_path() (in module birl.utilities.data_io)
_generate_regist_command() (birl.benchmark.ImRegBenchmark method)
(birl.bm_template.BmTemplate method)
(bm_experiments.bm_ANTs.BmANTs method)
(bm_experiments.bm_ANTsPy.BmANTsPy method)
(bm_experiments.bm_bUnwarpJ.BmUnwarpJ method)
(bm_experiments.bm_DROP.BmDROP method)
(bm_experiments.bm_DROP2.BmDROP2 method)
(bm_experiments.bm_elastix.BmElastix method)
(bm_experiments.bm_rNiftyReg.BmRNiftyReg method)
(bm_experiments.bm_RVSS.BmRVSS method)
_get_path_reg_dir() (birl.benchmark.ImRegBenchmark method)
_get_paths() (birl.benchmark.ImRegBenchmark method)
_get_ram() (in module birl.utilities.experiments)
_image_diag() (birl.benchmark.ImRegBenchmark class method)
_ImRegBenchmark__check_exist_regist() (birl.benchmark.ImRegBenchmark method)
_ImRegBenchmark__execute_method() (birl.benchmark.ImRegBenchmark method)
_ImRegBenchmark__export_df_experiments() (birl.benchmark.ImRegBenchmark method)
_ImRegBenchmark__images_preprocessing() (birl.benchmark.ImRegBenchmark method)
_ImRegBenchmark__remove_pproc_images() (birl.benchmark.ImRegBenchmark method)
_list_colors() (in module birl.utilities.drawing)
_load_data() (birl.benchmark.ImRegBenchmark method)
(birl.utilities.experiments.Experiment class method)
_load_landmarks() (birl.benchmark.ImRegBenchmark class method)
_load_warped_image() (birl.benchmark.ImRegBenchmark class method)
_parse_regist_results() (birl.benchmark.ImRegBenchmark method)
_perform_registration() (birl.benchmark.ImRegBenchmark method)
_prepare() (birl.bm_template.BmTemplate method)
(birl.utilities.experiments.Experiment class method)
(bm_experiments.bm_ANTs.BmANTs method)
(bm_experiments.bm_ANTsPy.BmANTsPy method)
(bm_experiments.bm_bUnwarpJ.BmUnwarpJ method)
(bm_experiments.bm_DROP.BmDROP method)
(bm_experiments.bm_elastix.BmElastix method)
(bm_experiments.bm_rNiftyReg.BmRNiftyReg method)
(bm_experiments.bm_RVSS.BmRVSS method)
_prepare_images() (in module bm_experiments.bm_comp_perform)
_prepare_img_registration() (birl.benchmark.ImRegBenchmark class method)
(birl.bm_template.BmTemplate method)
(bm_experiments.bm_ANTs.BmANTs method)
(bm_experiments.bm_DROP.BmDROP method)
(bm_experiments.bm_DROP2.BmDROP2 method)
_RadarChart__ax_set_invisible() (birl.utilities.drawing.RadarChart class method)
_RadarChart__draw_curve() (birl.utilities.drawing.RadarChart method)
_RadarChart__draw_labels() (birl.utilities.drawing.RadarChart method)
_RadarChart__realign_polar_xtick() (birl.utilities.drawing.RadarChart class method)
_relativize_path() (birl.benchmark.ImRegBenchmark method)
_run() (birl.benchmark.ImRegBenchmark method)
(birl.utilities.experiments.Experiment class method)
_summarise() (birl.benchmark.ImRegBenchmark method)
(birl.utilities.experiments.Experiment class method)
_visual_image_move_warp_lnds_move_warp() (birl.benchmark.ImRegBenchmark class method)
_visual_image_move_warp_lnds_ref_warp() (birl.benchmark.ImRegBenchmark class method)
A
aggregate_user_score_timeline() (in module birl.utilities.evaluate)
arg_parse_params() (in module bm_dataset.convert_tiff2png)
(in module bm_dataset.create_real_synth_dataset)
(in module bm_dataset.crop_tissue_images)
(in module bm_dataset.generate_regist_pairs)
(in module bm_dataset.rescale_tissue_images)
(in module bm_dataset.rescale_tissue_landmarks)
(in module bm_dataset.split_images_two_tissues)
(in module bm_experiments.bm_comp_perform)
args_expand_images() (in module birl.utilities.dataset)
args_expand_parse_images() (in module birl.utilities.dataset)
B
birl (module)
birl.benchmark (module)
birl.bm_template (module)
birl.utilities (module)
birl.utilities.data_io (module)
birl.utilities.dataset (module)
birl.utilities.drawing (module)
birl.utilities.evaluate (module)
birl.utilities.experiments (module)
birl.utilities.registration (module)
bm_dataset (module)
bm_dataset.convert_tiff2png (module)
bm_dataset.create_real_synth_dataset (module)
bm_dataset.crop_tissue_images (module)
bm_dataset.generate_regist_pairs (module)
bm_dataset.rescale_tissue_images (module)
bm_dataset.rescale_tissue_landmarks (module)
bm_dataset.split_images_two_tissues (module)
bm_experiments (module)
bm_experiments.bm_ANTs (module)
bm_experiments.bm_ANTsPy (module)
bm_experiments.bm_bUnwarpJ (module)
bm_experiments.bm_comp_perform (module)
bm_experiments.bm_DROP (module)
bm_experiments.bm_DROP2 (module)
bm_experiments.bm_elastix (module)
bm_experiments.bm_rNiftyReg (module)
bm_experiments.bm_RVSS (module)
bm_experiments.evaluate_experiment (module)
BmANTs (class in bm_experiments.bm_ANTs)
BmANTsPy (class in bm_experiments.bm_ANTsPy)
BmDROP (class in bm_experiments.bm_DROP)
BmDROP2 (class in bm_experiments.bm_DROP2)
BmElastix (class in bm_experiments.bm_elastix)
BmRNiftyReg (class in bm_experiments.bm_rNiftyReg)
BmRVSS (class in bm_experiments.bm_RVSS)
BmTemplate (class in birl.bm_template)
BmUnwarpJ (class in bm_experiments.bm_bUnwarpJ)
C
COL_IMAGE_DIAGONAL (birl.benchmark.ImRegBenchmark attribute)
COL_IMAGE_EXT_TEMP (birl.benchmark.ImRegBenchmark attribute)
COL_IMAGE_MOVE (birl.benchmark.ImRegBenchmark attribute)
COL_IMAGE_MOVE_NII (bm_experiments.bm_ANTs.BmANTs attribute)
COL_IMAGE_MOVE_WARP (birl.benchmark.ImRegBenchmark attribute)
COL_IMAGE_REF (birl.benchmark.ImRegBenchmark attribute)
COL_IMAGE_REF_NII (bm_experiments.bm_ANTs.BmANTs attribute)
COL_IMAGE_REF_WARP (birl.benchmark.ImRegBenchmark attribute)
COL_IMAGE_SIZE (birl.benchmark.ImRegBenchmark attribute)
COL_NB_LANDMARKS_INPUT (birl.benchmark.ImRegBenchmark attribute)
COL_NB_LANDMARKS_WARP (birl.benchmark.ImRegBenchmark attribute)
COL_PAIRED_LANDMARKS (in module birl.benchmark)
COL_POINTS_MOVE (birl.benchmark.ImRegBenchmark attribute)
COL_POINTS_MOVE_WARP (birl.benchmark.ImRegBenchmark attribute)
COL_POINTS_REF (birl.benchmark.ImRegBenchmark attribute)
COL_POINTS_REF_WARP (birl.benchmark.ImRegBenchmark attribute)
COL_REG_DIR (birl.benchmark.ImRegBenchmark attribute)
COL_ROBUSTNESS (birl.benchmark.ImRegBenchmark attribute)
COL_STATUS (birl.benchmark.ImRegBenchmark attribute)
COL_TIME (birl.benchmark.ImRegBenchmark attribute)
COL_TIME_CONVERT (bm_experiments.bm_DROP.BmDROP attribute)
COL_TIME_PREPROC (birl.benchmark.ImRegBenchmark attribute)
COMMAND_REGISTER (bm_experiments.bm_ANTs.BmANTs attribute)
(bm_experiments.bm_DROP2.BmDROP2 attribute)
COMMAND_REGISTRATION (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
(bm_experiments.bm_elastix.BmElastix attribute)
(bm_experiments.bm_RVSS.BmRVSS attribute)
COMMAND_TRANSFORMATION (bm_experiments.bm_elastix.BmElastix attribute)
COMMAND_WARP_IMAGE (bm_experiments.bm_ANTs.BmANTs attribute)
COMMAND_WARP_LANDMARKS (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
(bm_experiments.bm_RVSS.BmRVSS attribute)
COMMAND_WARP_POINTS (bm_experiments.bm_ANTs.BmANTs attribute)
common_landmarks() (in module birl.utilities.dataset)
compute_affine_transf_diff() (in module birl.utilities.evaluate)
compute_bounding_polygon() (in module birl.utilities.dataset)
compute_convex_hull() (in module birl.utilities.dataset)
compute_half_polygon() (in module birl.utilities.dataset)
compute_matrix_user_ranking() (in module birl.utilities.evaluate)
compute_ranking() (in module birl.utilities.evaluate)
compute_registration_accuracy() (birl.benchmark.ImRegBenchmark class method)
compute_registration_statistic() (birl.benchmark.ImRegBenchmark class method)
compute_target_regist_error_statistic() (in module birl.utilities.evaluate)
compute_tre() (in module birl.utilities.evaluate)
compute_tre_robustness() (in module birl.utilities.evaluate)
computer_info() (in module birl.utilities.experiments)
convert_image() (in module bm_dataset.convert_tiff2png)
convert_image_from_mhd() (in module birl.utilities.data_io)
convert_image_from_nifti() (in module birl.utilities.data_io)
convert_image_to_mhd() (in module birl.utilities.data_io)
convert_image_to_nifti() (in module birl.utilities.data_io)
convert_image_to_nifti_gray() (in module birl.utilities.data_io)
convert_landmarks_from_itk() (in module birl.utilities.dataset)
convert_landmarks_to_itk() (in module birl.utilities.dataset)
convert_ndarray2image() (in module birl.utilities.data_io)
CONVERT_RGB (in module birl.utilities.dataset)
COVER_COLUMNS (birl.benchmark.ImRegBenchmark attribute)
COVER_COLUMNS_EXT (birl.benchmark.ImRegBenchmark attribute)
COVER_COLUMNS_WRAP (birl.benchmark.ImRegBenchmark attribute)
CPU_COUNT (in module birl.utilities.experiments)
create_basic_parser() (in module birl.utilities.experiments)
create_experiment_folder() (in module birl.utilities.experiments)
create_figure() (in module birl.utilities.drawing)
create_folder() (in module birl.utilities.data_io)
create_parser() (in module bm_experiments.evaluate_experiment)
crop_image() (in module bm_dataset.crop_tissue_images)
CUT_DIMENSION (in module bm_dataset.split_images_two_tissues)
D
dataset_expand_landmarks() (in module bm_dataset.rescale_tissue_landmarks)
dataset_scale_landmarks() (in module bm_dataset.rescale_tissue_landmarks)
DEFAULT_PARAMS (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
(bm_experiments.bm_RVSS.BmRVSS attribute)
deform_image_landmarks() (in module bm_dataset.create_real_synth_dataset)
detect_binary_blocks() (in module birl.utilities.dataset)
dict_deep_update() (in module birl.utilities.experiments)
DIR_INPUTS (bm_experiments.bm_RVSS.BmRVSS attribute)
DIR_OUTPUTS (bm_experiments.bm_RVSS.BmRVSS attribute)
draw_heatmap() (in module birl.utilities.drawing)
draw_image_landmarks() (in module bm_dataset.create_real_synth_dataset)
draw_image_points() (in module birl.utilities.drawing)
draw_images_warped_landmarks() (in module birl.utilities.drawing)
draw_landmarks_origin_target_warped() (in module birl.utilities.drawing)
draw_matrix_user_ranking() (in module birl.utilities.drawing)
draw_scatter_double_scale() (in module birl.utilities.drawing)
E
effective_decimals() (in module birl.utilities.drawing)
estimate_affine_transform() (in module birl.utilities.registration)
estimate_scaling() (in module birl.utilities.dataset)
exec_commands() (in module birl.utilities.experiments)
EXEC_ELASTIX (bm_experiments.bm_elastix.BmElastix attribute)
EXEC_REGISTRATION (bm_experiments.bm_ANTs.BmANTs attribute)
EXEC_TRANSFORM_IMAGE (bm_experiments.bm_ANTs.BmANTs attribute)
EXEC_TRANSFORM_POINTS (bm_experiments.bm_ANTs.BmANTs attribute)
EXEC_TRANSFX (bm_experiments.bm_elastix.BmElastix attribute)
EXECUTE_TIMEOUT (birl.benchmark.ImRegBenchmark attribute)
(bm_experiments.bm_ANTs.BmANTs attribute)
expand_random_warped_landmarks() (in module bm_dataset.rescale_tissue_landmarks)
Experiment (class in birl.utilities.experiments)
export_figure() (in module birl.utilities.drawing)
export_image_landmarks() (in module bm_dataset.create_real_synth_dataset)
export_summary_results() (in module birl.benchmark)
extend_landmarks() (in module bm_dataset.rescale_tissue_landmarks)
extend_parse() (birl.benchmark.ImRegBenchmark static method)
(birl.bm_template.BmTemplate static method)
(bm_experiments.bm_ANTs.BmANTs static method)
(bm_experiments.bm_ANTsPy.BmANTsPy static method)
(bm_experiments.bm_bUnwarpJ.BmUnwarpJ static method)
(bm_experiments.bm_DROP.BmDROP static method)
(bm_experiments.bm_elastix.BmElastix static method)
(bm_experiments.bm_rNiftyReg.BmRNiftyReg static method)
(bm_experiments.bm_RVSS.BmRVSS static method)
extract_landmarks_shift_from_mhd() (bm_experiments.bm_DROP.BmDROP static method)
extract_landmarks_shift_from_nifty() (bm_experiments.bm_DROP2.BmDROP2 static method)
F
FILE_LOGS (in module birl.utilities.experiments)
filter_paired_landmarks() (in module birl.benchmark)
find_largest_object() (in module birl.utilities.dataset)
find_split_objects() (in module birl.utilities.dataset)
FORMAT_DATE_TIME (in module birl.utilities.experiments)
G
generate_deformation_field_gauss() (in module bm_dataset.create_real_synth_dataset)
generate_deformation_field_rbf() (in module bm_dataset.create_real_synth_dataset)
generate_pairing() (in module birl.utilities.dataset)
generate_pairs() (in module bm_dataset.generate_regist_pairs)
generate_random_points_inside() (in module bm_dataset.rescale_tissue_landmarks)
get_affine_components() (in module birl.utilities.registration)
get_close_diag_corners() (in module birl.utilities.dataset)
get_name() (in module bm_dataset.create_real_synth_dataset)
grouping_cumulative() (in module birl.utilities.evaluate)
H
histogram_match_cumulative_cdf() (in module birl.utilities.dataset)
I
image_color_shift_hue() (in module bm_dataset.create_real_synth_dataset)
IMAGE_EXTENSIONS (in module birl.utilities.dataset)
image_histogram_matching() (in module birl.utilities.dataset)
image_resize() (in module birl.utilities.data_io)
image_sizes() (in module birl.utilities.data_io)
ImRegBenchmark (class in birl.benchmark)
inside_polygon() (in module birl.utilities.dataset)
io_image_decorate() (in module birl.utilities.data_io)
is_iterable() (in module birl.utilities.experiments)
is_point_above_line() (in module birl.utilities.dataset)
is_point_in_quadrant_left() (in module birl.utilities.dataset)
is_point_inside_perpendicular() (in module birl.utilities.dataset)
ITERABLE_TYPES (in module birl.utilities.experiments)
iterate_mproc_map() (in module birl.utilities.experiments)
L
LANDMARK_COORDS (in module birl.utilities.data_io)
line_angle_2d() (in module birl.utilities.dataset)
list_sub_folders() (in module birl.utilities.dataset)
load_config_args() (in module birl.utilities.data_io)
load_config_yaml() (in module birl.utilities.data_io)
load_image() (in module birl.utilities.data_io)
load_landmarks() (in module birl.utilities.data_io)
load_landmarks_csv() (in module birl.utilities.data_io)
load_landmarks_pts() (in module birl.utilities.data_io)
load_large_image() (in module birl.utilities.dataset)
load_largest_scale() (in module bm_dataset.rescale_tissue_landmarks)
LOG_FILE_FORMAT (in module birl.utilities.experiments)
M
main() (birl.benchmark.ImRegBenchmark class method)
(in module bm_dataset.convert_tiff2png)
(in module bm_dataset.create_real_synth_dataset)
(in module bm_dataset.crop_tissue_images)
(in module bm_dataset.generate_regist_pairs)
(in module bm_dataset.rescale_tissue_images)
(in module bm_dataset.rescale_tissue_landmarks)
(in module bm_dataset.split_images_two_tissues)
(in module bm_experiments.bm_comp_perform)
(in module bm_experiments.evaluate_experiment)
MAX_FIGURE_SIZE (in module birl.utilities.drawing)
MAX_IMAGE_DIAGONAL (bm_experiments.bm_DROP.BmDROP attribute)
MAX_IMAGE_SIZE (in module birl.utilities.dataset)
measure_registration_parallel() (in module bm_experiments.bm_comp_perform)
measure_registration_single() (in module bm_experiments.bm_comp_perform)
N
NAME_CONFIG_YAML (birl.utilities.experiments.Experiment attribute)
NAME_CSV_REGISTRATION_PAIRS (birl.benchmark.ImRegBenchmark attribute)
NAME_CSV_RESULTS (in module bm_experiments.evaluate_experiment)
NAME_CSV_SUMMARY (in module bm_experiments.evaluate_experiment)
NAME_FILE_IMAGE (bm_experiments.bm_rNiftyReg.BmRNiftyReg attribute)
NAME_FILE_LANDMARKS (bm_experiments.bm_rNiftyReg.BmRNiftyReg attribute)
NAME_FILE_TIME (bm_experiments.bm_rNiftyReg.BmRNiftyReg attribute)
NAME_IMAGE_MOVE_WARP_POINTS (birl.benchmark.ImRegBenchmark attribute)
NAME_IMAGE_REF_POINTS_WARP (birl.benchmark.ImRegBenchmark attribute)
NAME_IMAGE_REF_WARP (birl.benchmark.ImRegBenchmark attribute)
NAME_IMAGE_WARPED (bm_experiments.bm_ANTsPy.BmANTsPy attribute)
(bm_experiments.bm_elastix.BmElastix attribute)
NAME_IMAGE_WARPED_VISUAL (birl.benchmark.ImRegBenchmark attribute)
NAME_LANDMARKS (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
NAME_LANDMARKS_WARPED (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
NAME_LNDS_WARPED (bm_experiments.bm_ANTsPy.BmANTsPy attribute)
(bm_experiments.bm_elastix.BmElastix attribute)
NAME_LOG_REGISTRATION (birl.benchmark.ImRegBenchmark attribute)
NAME_RESULTS_CSV (birl.benchmark.ImRegBenchmark attribute)
(birl.utilities.experiments.Experiment attribute)
NAME_RESULTS_TXT (birl.benchmark.ImRegBenchmark attribute)
(birl.utilities.experiments.Experiment attribute)
NAME_TIME_EXEC (bm_experiments.bm_ANTsPy.BmANTsPy attribute)
NAME_TRANSF_DIRECT (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
NAME_TRANSF_INVERSE (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
NAME_TXT_SUMMARY (in module bm_experiments.evaluate_experiment)
NB_WORKERS (in module bm_experiments.evaluate_experiment)
nb_workers() (in module birl.utilities.experiments)
NB_WORKERS_USED (birl.benchmark.ImRegBenchmark attribute)
norm_angle() (in module birl.utilities.dataset)
(in module birl.utilities.registration)
O
overlap_two_images() (in module birl.utilities.drawing)
P
parse_arg_params() (in module birl.utilities.experiments)
parse_path_scale() (in module birl.utilities.dataset)
parse_warped_points() (bm_experiments.bm_elastix.BmElastix static method)
PATH_IJ_SCRIPTS (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
PATH_SCRIPT_REGISTRATION (bm_experiments.bm_RVSS.BmRVSS attribute)
PATH_SCRIPT_REGISTRATION_BASE (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
PATH_SCRIPT_REGISTRATION_SIFT (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
PATH_SCRIPT_WARP_LANDMARKS (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
(bm_experiments.bm_RVSS.BmRVSS attribute)
perform_deform_export() (in module bm_dataset.create_real_synth_dataset)
project_object_edge() (in module birl.utilities.dataset)
R
RadarChart (class in birl.utilities.drawing)
REEXP_FOLDER_SCALE (in module birl.utilities.dataset)
register_image_pair() (in module bm_experiments.bm_comp_perform)
release_logger_files() (in module birl.utilities.experiments)
REQUIRED_PARAMS (birl.benchmark.ImRegBenchmark attribute)
(birl.bm_template.BmTemplate attribute)
(birl.utilities.experiments.Experiment attribute)
(bm_experiments.bm_ANTs.BmANTs attribute)
(bm_experiments.bm_ANTsPy.BmANTsPy attribute)
(bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
(bm_experiments.bm_DROP.BmDROP attribute)
(bm_experiments.bm_elastix.BmElastix attribute)
(bm_experiments.bm_rNiftyReg.BmRNiftyReg attribute)
(bm_experiments.bm_RVSS.BmRVSS attribute)
REQUIRED_PARAMS_BUNWARPJ (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
REQUIRED_PARAMS_RVSS (bm_experiments.bm_RVSS.BmRVSS attribute)
REQUIRED_PARAMS_SIFT (bm_experiments.bm_bUnwarpJ.BmUnwarpJ attribute)
run() (birl.utilities.experiments.Experiment method)
S
save_config_yaml() (in module birl.utilities.data_io)
save_image() (in module birl.utilities.data_io)
save_landmarks() (in module birl.utilities.data_io)
save_landmarks_csv() (in module birl.utilities.data_io)
save_landmarks_pts() (in module birl.utilities.data_io)
save_large_image() (in module birl.utilities.dataset)
scale_image() (in module bm_dataset.rescale_tissue_images)
scale_large_images_landmarks() (in module birl.utilities.dataset)
scale_set_landmarks() (in module bm_dataset.rescale_tissue_landmarks)
SCALE_SIZE (in module bm_dataset.split_images_two_tissues)
set_experiment_logger() (in module birl.utilities.experiments)
simplify_polygon() (in module birl.utilities.dataset)
split_image() (in module bm_dataset.split_images_two_tissues)
STR_LOG_FORMAT (in module birl.utilities.experiments)
string_dict() (in module birl.utilities.experiments)
T
TISSUE_CONTENT (in module birl.utilities.dataset)
transform_points() (in module birl.utilities.registration)
try_decorator() (in module birl.utilities.experiments)
U
update_path() (in module birl.utilities.data_io)
update_paths() (in module birl.utilities.experiments)
V
visualise_registration() (birl.benchmark.ImRegBenchmark class method)
W
wrap_scale_image() (in module bm_dataset.rescale_tissue_images)
Quick search
Navigation
index
modules
|
BIRL 0.2.5 documentation
»